JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGGT1B_chr5_115199012_115267877	0/0	t0081	8439	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0082	8411	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0083	8431	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0084	8429	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0085	8427	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0086	8425	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0087	8437	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0088	8435	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0089	8432	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0090	8432	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0091	8439	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0092	8445	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0093	8443	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0094	8441	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0095	8439	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0096	8433	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0097	8409	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0098	8408	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0099	8411	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0100	8409	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0101	8409	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0102	8410	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0103	8447	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0104	8443	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0105	8439	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0106	8422	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0107	8450	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0108	8446	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0109	8442	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0110	8434	1	0	0	0	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0111	8409	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0112	8410	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0113	8444	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0114	8438	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0115	8410	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0116	8414	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0117	8445	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0118	8441	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0119	8435	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0120	8429	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0121	8411	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0122	8420	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0123	8416	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0124	8437	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0125	8436	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0126	8432	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0127	8444	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0128	8440	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0129	8428	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0130	8417	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877