JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGGT1B_chr5_115199012_115267877	0/0	t0131	8432	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0132	8425	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0133	8423	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0134	8428	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0135	8422	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0136	8412	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0137	8417	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0138	8425	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0139	8425	1	0	0	0	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0140	8419	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0141	8422	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGK1_chrX_78099248_78134295	0/0	t0001	3569	32	1	3	23	2	3	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	1/1	t0002	3559	31	2	9	7	3	8	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0003	3567	26	0	5	18	0	3	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0004	3563	26	1	4	15	1	5	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0005	3567	22	17	1	3	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0006	3572	21	5	13	0	1	2	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0007	3565	20	1	2	16	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0008	3573	17	2	0	15	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0009	3571	10	2	3	2	1	2	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0010	3563	7	2	1	4	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0011	3577	7	0	0	4	0	3	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0012	3575	5	1	0	4	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0013	3580	5	1	4	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0014	3575	4	0	0	4	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0015	3555	4	0	1	2	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0016	3581	4	0	0	4	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0017	3564	4	3	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0018	3579	3	0	0	3	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0019	3557	3	0	0	3	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0020	3576	3	1	1	0	0	1	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0021	3568	3	2	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0022	3571	3	3	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0023	3567	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0024	3574	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0025	3570	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0026	3566	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0027	3571	2	0	0	2	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0028	3575	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0029	3563	2	2	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0030	3559	2	1	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0031	3567	2	0	0	2	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0032	3561	2	0	0	0	0	2	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0033	3569	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0034	3570	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0035	3567	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0036	3554	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0037	3578	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0038	3568	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0039	3563	1	0	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295