JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGK1_chrX_78099248_78134295	0/0	t0040	3555	1	0	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0041	3559	1	0	1	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0042	3559	1	0	0	0	1	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0043	3563	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0044	3576	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0045	3572	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0046	3567	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0047	3566	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0048	3567	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0049	3579	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0050	3543	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0051	3579	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0052	3563	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0053	3582	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0054	3566	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0055	3549	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0056	3567	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0057	3565	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0058	3575	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0059	3563	1	1	0	0	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK1_chrX_78099248_78134295	0/0	t0060	3577	1	0	0	1	0	0	copy fasta	PGK1	chrX	78099248	78134295
PGK2_chr6_49780660_49792285	1/1	t0001	373	402	94	74	168	18	46	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	t0002	373	2	1	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	t0003	373	1	0	1	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGK2_chr6_49780660_49792285	0/0	t0004	373	1	1	0	0	0	0	copy fasta	PGK2	chr6	49780660	49792285
PGLS_chr19_17506649_17526288	1/1	t0001	232	435	93	75	199	18	48	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	t0002	232	2	2	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	t0003	232	2	0	2	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	t0004	232	1	1	0	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	t0005	232	1	0	0	1	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLS_chr19_17506649_17526288	0/0	t0006	232	1	0	1	0	0	0	copy fasta	PGLS	chr19	17506649	17526288
PGLYRP1_chr19_46014153_46028053	0/0	t0001	118	253	48	43	133	6	23	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	1/1	t0002	118	192	36	37	80	12	25	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	t0003	118	4	4	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	t0004	118	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	t0005	118	2	0	0	2	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	t0006	118	2	2	0	0	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP1_chr19_46014153_46028053	0/0	t0007	118	1	0	0	1	0	0	copy fasta	PGLYRP1	chr19	46014153	46028053
PGLYRP2_chr19_15463645_15484501	1/1	t0001	149	365	84	71	148	18	42	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	t0002	147	16	16	0	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP2_chr19_15463645_15484501	0/0	t0003	149	1	0	1	0	0	0	copy fasta	PGLYRP2	chr19	15463645	15484501
PGLYRP3_chr1_153292116_153317952	0/0	t0001	1208	25	2	5	13	0	5	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0002	1200	24	3	10	10	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0003	1188	21	1	10	7	1	2	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0004	1204	20	1	5	9	0	5	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0005	1180	18	4	5	6	2	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0006	1200	16	0	0	16	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0007	1200	14	0	1	13	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0008	1184	12	4	2	3	2	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0009	1212	12	1	2	9	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952