JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGLYRP3_chr1_153292116_153317952	0/0	t0010	1172	11	0	6	2	0	3	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0011	1196	11	8	0	2	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0012	1196	11	2	4	4	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0013	1204	11	0	1	10	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0014	1208	10	0	3	2	5	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0015	1204	10	2	2	6	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0016	1176	8	3	2	1	1	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0017	1204	8	0	0	8	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0018	1196	8	0	0	8	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0019	1200	8	1	3	3	1	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0020	1192	7	1	1	4	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0021	1208	7	0	1	6	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0022	1200	7	1	2	2	0	2	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0023	1168	6	3	3	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	1/0	t0024	1192	6	0	1	1	0	3	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0025	1188	5	2	0	0	0	3	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0026	1204	5	0	0	4	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0027	1192	4	0	0	4	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0028	1216	4	1	0	2	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0029	1184	3	1	0	1	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0030	1176	3	3	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0031	1192	3	2	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0032	1196	3	0	1	2	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0033	1176	3	1	1	0	1	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0034	1196	3	0	0	2	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0035	1182	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0036	1192	2	0	0	2	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0037	1208	2	1	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0038	1200	2	1	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0039	1170	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0040	1176	2	1	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0041	1188	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0042	1204	2	1	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0043	1216	2	0	0	2	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0044	1212	2	1	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0045	1192	2	0	1	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0046	1166	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0047	1235	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0048	1172	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0049	1172	2	1	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0050	1166	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0051	1162	2	2	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0052	1158	2	0	0	0	1	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0053	1212	2	0	0	0	0	2	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0054	1208	2	0	0	2	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0055	1204	2	0	0	2	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0056	1208	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0057	1204	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0058	1188	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0059	1216	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952