JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGLYRP3_chr1_153292116_153317952	0/0	t0060	1204	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0061	1204	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0062	1198	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0063	1184	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0064	1188	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0065	1228	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0066	1224	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0067	1224	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0068	1223	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0069	1200	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0070	1196	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0071	1188	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0072	1192	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0073	1192	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0074	1172	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0075	1164	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0076	1190	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0077	1212	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0078	1204	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0079	1212	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0080	1208	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0081	1200	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0082	1192	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0083	1195	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0084	1212	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/1	t0085	1196	1	0	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0086	1236	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0087	1220	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0088	1220	1	0	0	0	1	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0089	1212	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0090	1204	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0091	1198	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0092	1186	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0093	1188	1	0	0	0	1	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0094	1178	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0095	1212	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0096	1208	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0097	1228	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0098	1248	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0099	1219	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0100	1211	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0101	1209	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0102	1191	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0103	1196	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0104	1162	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0105	1151	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0106	1225	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0107	1176	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0108	1172	1	0	1	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0109	1209	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952