JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGLYRP3_chr1_153292116_153317952	0/0	t0110	1180	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0111	1180	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0112	1176	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0113	1162	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0114	1158	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0115	1152	1	1	0	0	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0116	1208	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0117	1192	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0118	1188	1	0	0	0	0	1	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0119	1200	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP3_chr1_153292116_153317952	0/0	t0120	1172	1	0	0	1	0	0	copy fasta	PGLYRP3	chr1	153292116	153317952
PGLYRP4_chr1_153325120_153353841	0/1	t0001	1011	176	39	25	87	8	16	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0002	1011	108	27	28	34	7	12	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	1/0	t0003	1008	54	14	6	20	1	12	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0004	1011	39	2	0	37	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0005	1008	4	4	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0006	1008	4	4	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0007	1008	2	2	0	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0008	1011	1	0	1	0	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0009	1008	1	0	0	1	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0010	1008	1	0	0	1	0	0	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0011	1011	1	0	0	0	0	1	copy fasta	PGLYRP4	chr1	153325120	153353841
PGLYRP4_chr1_153325120_153353841	0/0	t0012	1011	1	0	0	0	0	1	copy fasta	PGLYRP4	chr1	153325120	153353841
PGM1_chr1_63588411_63665245	1/1	t0001	649	256	44	45	130	4	31	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0002	649	48	6	13	25	2	2	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0003	649	45	31	6	2	3	3	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0004	649	4	0	0	4	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0005	649	4	4	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0006	649	3	0	2	0	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0007	649	2	0	1	0	1	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0008	649	1	1	0	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0009	649	1	0	0	1	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0010	649	1	0	1	0	0	0	copy fasta	PGM1	chr1	63588411	63665245
PGM1_chr1_63588411_63665245	0/0	t0011	649	1	0	0	0	0	1	copy fasta	PGM1	chr1	63588411	63665245
PGM2L1_chr11_74325316_74403433	0/0	t0001	6613	56	1	6	45	1	3	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0002	6611	49	7	4	30	3	5	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/1	t0003	6613	48	5	12	16	3	11	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0004	6609	44	19	3	16	2	4	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0005	6609	42	0	8	29	0	5	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0006	6611	13	0	2	10	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0007	6611	11	0	0	11	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0008	6608	11	11	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0009	6606	9	9	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0010	6609	8	1	1	5	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0011	6614	5	1	2	0	2	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0012	6610	5	0	0	5	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0013	6608	5	5	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0014	6608	5	0	1	0	0	4	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0015	6608	4	4	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0016	6608	4	4	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433