JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGM2L1_chr11_74325316_74403433	0/0	t0017	6609	4	3	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0018	6612	3	0	0	2	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0019	6607	3	2	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0020	6614	2	0	0	2	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0021	6612	2	0	0	1	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0022	6606	2	2	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0023	6608	2	1	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0024	6607	2	2	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0025	6609	2	2	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0026	6609	2	2	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0027	6609	2	0	0	2	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0028	6608	2	0	0	2	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0029	6609	2	1	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0030	6613	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0031	6609	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0032	6613	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0033	6613	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0034	6613	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0035	6609	1	0	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0036	6613	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0037	6613	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0038	6612	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0039	6607	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0040	6607	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0041	6611	1	0	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0042	6611	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0043	6607	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0044	6613	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0045	6608	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0046	6608	1	0	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0047	6608	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0048	6613	1	0	0	0	0	1	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0049	6608	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0050	6609	1	0	0	0	1	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0051	6609	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0052	6608	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0053	6609	1	0	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0054	6609	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0055	6609	1	0	0	1	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0056	6608	1	0	1	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0057	6609	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0058	6608	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	0/0	t0059	6609	1	1	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2L1_chr11_74325316_74403433	1/0	t0060	6609	1	0	0	0	0	0	copy fasta	PGM2L1	chr11	74325316	74403433
PGM2_chr4_37821686_37867937	1/1	t0001	1373	287	54	48	136	15	32	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0002	1373	56	20	7	24	2	3	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0003	1373	44	12	8	23	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0004	1373	35	0	1	31	0	3	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0005	1367	11	0	0	11	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0006	1373	5	1	1	0	1	2	copy fasta	PGM2	chr4	37821686	37867937