JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGM2_chr4_37821686_37867937	0/0	t0007	1373	3	3	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0008	1373	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0009	1373	1	1	0	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0010	1408	1	0	1	0	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0011	1373	1	0	0	0	0	1	copy fasta	PGM2	chr4	37821686	37867937
PGM2_chr4_37821686_37867937	0/0	t0012	1373	1	0	0	1	0	0	copy fasta	PGM2	chr4	37821686	37867937
PGM3_chr6_83159873_83198265	1/0	t0001	4451	152	33	35	50	7	26	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0002	4451	83	14	10	47	3	9	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0003	4446	31	8	1	17	0	5	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0004	4451	11	8	2	0	1	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0005	4450	9	0	0	9	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0006	4451	8	0	1	6	0	1	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/1	t0007	4451	6	1	3	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0008	4451	5	0	4	0	1	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0009	4451	5	5	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0010	4451	4	4	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0011	4455	4	4	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0012	4451	3	0	0	3	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0013	4451	2	0	2	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0014	4451	2	2	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0015	4451	2	0	2	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0016	4451	2	2	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0017	4451	2	2	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0018	4451	2	2	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0019	4451	2	0	0	2	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0020	4451	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0021	4451	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0022	4451	1	0	0	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0023	4451	1	0	0	0	0	1	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0024	4451	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0025	4451	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0026	4451	1	0	0	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0027	4451	1	0	0	1	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM3_chr6_83159873_83198265	0/0	t0028	4451	1	1	0	0	0	0	copy fasta	PGM3	chr6	83159873	83198265
PGM5_chr9_68351611_68536061	0/0	t0001	1922	58	13	9	29	3	4	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/1	t0002	1922	56	9	13	26	4	3	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0003	1922	18	2	4	3	1	8	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	1/0	t0004	1923	14	12	1	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0005	1923	9	5	2	0	1	1	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0006	1923	9	1	0	8	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0007	1923	8	7	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0008	1923	7	1	0	5	0	1	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0009	1923	7	5	1	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0010	1923	7	0	0	5	0	2	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0011	1922	6	0	1	5	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0012	1923	5	1	0	1	0	3	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0013	1922	4	0	4	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0014	1922	4	0	0	4	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0015	1923	4	0	2	0	2	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0016	1923	3	3	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061