Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATF7IP_chr12_14360682_14507930	0/0	t0021	5006	2	0	2	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0022	5006	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0023	5011	2	0	2	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0024	5012	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0025	5012	2	0	0	0	2	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0026	5012	2	0	0	2	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0027	5006	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0028	5012	1	1	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0029	5006	1	0	1	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0030	5006	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0031	5006	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0032	5006	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0033	5006	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0034	5011	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0035	5011	1	1	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0036	5012	1	1	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0037	5012	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0038	5013	1	1	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0039	5012	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0040	5013	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0041	5013	1	0	1	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7_chr12_53507054_53631382	1/1	t0001	5209	219	68	46	71	8	24	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0002	5209	36	0	4	22	1	9	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0003	5209	15	7	1	5	0	2	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0004	5209	10	0	0	10	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0005	5209	6	0	4	0	2	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0006	5209	5	0	0	5	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0007	5209	5	0	4	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0008	5209	4	4	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0009	5209	4	0	3	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0010	5209	3	1	2	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0011	5209	2	0	0	0	1	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0012	5209	2	0	0	2	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0013	5209	2	0	0	2	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0014	5209	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0015	5209	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0016	5209	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0017	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0018	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0019	5209	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0020	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0021	5209	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0022	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0023	5209	1	0	1	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0024	5209	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0025	5209	1	0	1	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0026	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0027	5209	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0028	5209	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	t0029	5209	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382