JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGM5_chr9_68351611_68536061	0/0	t0017	1923	3	3	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0018	1923	3	2	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0019	1922	2	0	0	2	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0020	1923	2	0	0	0	0	2	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0021	1922	2	0	2	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0022	1923	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0023	1923	2	2	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0024	1922	2	0	2	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0025	1922	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0026	1922	1	0	0	0	1	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0027	1923	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0028	1923	1	0	1	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0029	1908	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0030	1908	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0031	1923	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0032	1923	1	1	0	0	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGM5_chr9_68351611_68536061	0/0	t0033	1922	1	0	0	1	0	0	copy fasta	PGM5	chr9	68351611	68536061
PGPEP1L_chr15_98963229_99012792	0/1	t0001	1053	200	32	41	93	10	23	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0002	1053	69	1	4	54	1	9	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0003	1053	26	21	3	2	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	1/0	t0004	1053	20	2	3	9	2	3	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0005	1053	18	5	7	0	1	5	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0006	1053	8	6	1	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0007	1053	7	6	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0008	1053	6	1	5	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0009	1053	6	5	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0010	1053	3	2	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0011	1053	3	3	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0012	1053	3	2	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0013	1053	2	2	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0014	1053	2	0	2	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0015	1053	2	0	0	2	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0016	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0017	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0018	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0019	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0020	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0021	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0022	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0023	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0024	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0025	1053	1	0	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0026	1217	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0027	1053	1	0	0	0	0	1	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0028	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0029	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0030	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0031	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0032	1053	1	0	1	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0033	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792