JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGPEP1L_chr15_98963229_99012792	0/0	t0034	1053	1	1	0	0	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0035	1053	1	0	0	0	0	1	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0036	1053	1	0	0	0	0	1	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0037	1053	1	0	0	0	0	1	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1L_chr15_98963229_99012792	0/0	t0038	1053	1	0	0	1	0	0	copy fasta	PGPEP1L	chr15	98963229	99012792
PGPEP1_chr19_18335598_18374950	0/0	t0001	6457	14	0	3	9	0	2	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0002	6457	6	0	3	2	1	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0003	6511	6	0	2	4	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0004	6511	5	0	2	3	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0005	6453	5	0	0	5	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0006	6515	5	0	0	5	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0007	6457	4	0	2	0	0	2	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0008	6515	3	0	2	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0009	6519	3	0	3	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0010	6465	3	0	0	2	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0011	6498	3	2	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/1	t0012	6454	3	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0013	6448	3	0	0	3	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0014	6448	3	0	0	3	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0015	6476	3	0	3	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0016	6453	3	0	3	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0017	6511	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0018	6452	2	0	0	0	0	2	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0019	6448	2	0	1	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0020	6456	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0021	6465	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0022	6465	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0023	6464	2	0	0	0	2	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0024	6468	2	0	0	1	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0025	6469	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0026	6472	2	0	0	1	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0027	6476	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0028	6473	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0029	6473	2	0	1	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0030	6453	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0031	6526	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0032	6463	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0033	6476	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0034	6507	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0035	6454	2	0	0	0	0	2	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0036	6453	2	0	0	0	1	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0037	6458	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0038	6453	2	0	1	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0039	6434	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0040	6431	2	0	1	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0041	6457	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0042	6454	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0043	6467	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0044	6450	2	0	2	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0045	6449	2	0	1	0	1	0	copy fasta	PGPEP1	chr19	18335598	18374950