JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGPEP1_chr19_18335598_18374950	0/0	t0046	6457	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0047	6478	2	2	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0048	6512	2	0	1	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0049	6508	2	0	0	0	0	2	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0050	6499	2	0	0	0	2	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0051	6511	2	0	0	2	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0052	6496	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0053	6448	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0054	6453	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0055	6515	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0056	6516	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0057	6512	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0058	6448	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0059	6447	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0060	6452	1	0	0	0	1	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0061	6452	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0062	6452	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0063	6450	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0064	6452	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0065	6454	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0066	6454	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0067	6454	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0068	6448	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0069	6466	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0070	6493	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0071	6472	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0072	6488	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0073	6473	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0074	6465	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0075	6488	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0076	6461	1	0	0	0	1	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0077	6461	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0078	6461	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0079	6461	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0080	6460	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0081	6465	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0082	6438	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0083	6491	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0084	6463	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0085	6465	1	0	0	0	0	1	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0086	6467	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0087	6467	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0088	6480	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0089	6469	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0090	6466	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0091	6466	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0092	6468	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0093	6464	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0094	6468	1	1	0	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0095	6464	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950