JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGPEP1_chr19_18335598_18374950	0/0	t0296	6512	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0297	6493	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0298	6517	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0299	6515	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0300	6503	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0301	6519	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0302	6497	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0303	6520	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0304	6519	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0305	6507	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0306	6531	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0307	6447	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0308	6447	1	0	1	0	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0309	6503	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0310	6531	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0311	6495	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0312	6508	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0313	6510	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0314	6511	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0315	6517	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0316	6515	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0317	6511	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0318	6515	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0319	6514	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0320	6507	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGPEP1_chr19_18335598_18374950	0/0	t0321	6523	1	0	0	1	0	0	copy fasta	PGPEP1	chr19	18335598	18374950
PGP_chr16_2206593_2219840	0/1	t0001	2203	149	9	23	82	10	24	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0002	2199	132	34	27	57	2	12	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0003	2203	54	0	15	39	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0004	2203	28	28	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	1/0	t0005	2199	15	3	5	3	0	3	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0006	2203	14	0	0	9	2	3	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0007	2203	7	3	3	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0008	2203	6	6	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0009	2203	4	4	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0010	2203	3	0	2	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0011	2203	3	0	2	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0012	2203	3	0	3	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0013	2199	3	0	3	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0014	2199	3	0	2	0	1	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0015	2203	3	3	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0016	2203	2	0	0	2	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0017	2199	2	2	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0018	2199	2	0	0	2	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0019	2199	2	0	0	0	0	2	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0020	2203	1	1	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0021	2203	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0022	2203	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0023	2203	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0024	2203	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840