JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGP_chr16_2206593_2219840	0/0	t0025	2203	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0026	2199	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0027	2199	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0028	2203	1	0	1	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0029	2203	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0030	2203	1	1	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0031	2199	1	1	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0032	2199	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0033	2203	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0034	2203	1	1	0	0	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0035	2199	1	0	0	1	0	0	copy fasta	PGP	chr16	2206593	2219840
PGP_chr16_2206593_2219840	0/0	t0036	2182	1	0	0	0	0	1	copy fasta	PGP	chr16	2206593	2219840
PGRMC1_chrX_119231285_119249466	1/1	t0001	1292	255	66	50	97	12	28	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	0/0	t0002	1292	8	4	2	0	1	1	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC1_chrX_119231285_119249466	0/0	t0003	1293	1	0	1	0	0	0	copy fasta	PGRMC1	chrX	119231285	119249466
PGRMC2_chr4_128264242_128292813	0/0	t0001	2098	218	41	51	90	10	26	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	1/1	t0002	2098	149	26	22	80	7	12	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0003	2097	25	0	0	25	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0004	2099	15	13	2	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0005	2104	4	4	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0006	2098	4	0	0	4	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0007	2098	4	4	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0008	2098	3	0	0	3	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0009	2099	2	2	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0010	2098	1	0	1	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0011	2098	1	1	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0012	2098	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0013	2098	1	0	1	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0014	2098	1	0	0	0	1	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0015	2098	1	0	1	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0016	2098	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0017	2098	1	1	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0018	2098	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0019	2098	1	0	0	1	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0020	2098	1	1	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGRMC2_chr4_128264242_128292813	0/0	t0021	2098	1	1	0	0	0	0	copy fasta	PGRMC2	chr4	128264242	128292813
PGR_chr11_101024624_101134813	0/0	t0001	10240	30	6	4	15	2	3	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0002	10237	29	3	14	2	4	6	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0003	10237	25	0	4	16	1	4	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0004	10237	21	14	4	0	1	2	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0005	10240	8	2	4	1	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0006	10240	6	5	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0007	10237	6	0	2	0	2	2	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0008	10237	5	2	0	3	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0009	10240	5	3	2	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0010	10237	5	3	2	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0011	10235	4	3	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0012	10237	4	0	0	2	0	2	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0013	10237	4	4	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0014	10239	4	0	0	0	0	4	copy fasta	PGR	chr11	101024624	101134813