JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGR_chr11_101024624_101134813	0/0	t0015	10240	3	0	2	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0016	10240	3	0	0	3	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0017	10237	3	0	1	2	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0018	10240	2	0	0	2	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0019	10240	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0020	10240	2	0	2	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0021	10241	2	0	0	0	2	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0022	10240	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0023	10240	2	1	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0024	10240	2	0	0	2	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0025	10240	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0026	10240	2	1	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0027	10237	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/1	t0028	10237	2	0	0	0	1	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0029	10237	2	0	0	0	0	2	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0030	10237	2	0	0	2	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0031	10237	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0032	10240	2	2	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0033	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0034	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0035	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0036	10238	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0037	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0038	10235	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0039	10230	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0040	10235	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0041	10235	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0042	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0043	10240	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0044	10240	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0045	10240	1	0	0	0	1	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0046	10240	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0047	10240	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0048	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0049	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0050	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0051	10240	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0052	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0053	10235	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0054	10240	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0055	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0056	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0057	10240	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0058	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0059	10240	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0060	10240	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0061	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0062	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0063	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0064	10232	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813