Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATF7_chr12_53507054_53631382	0/0	t0030	5209	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATG101_chr12_52064978_52082495	1/1	t0001	777	199	41	32	98	7	19	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0002	777	117	7	21	72	2	15	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0003	777	29	26	3	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0004	777	17	7	3	0	4	3	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0005	777	7	5	1	1	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0006	777	6	0	0	0	1	5	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0007	777	4	4	0	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0008	777	2	0	2	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0009	777	2	0	0	2	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0010	777	2	0	0	0	0	2	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0011	777	1	0	0	1	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0012	777	1	1	0	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0013	777	1	1	0	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0014	777	1	0	1	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0015	764	1	0	1	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0016	777	1	0	0	1	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0017	777	1	1	0	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0018	777	1	0	0	1	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	t0019	777	1	1	0	0	0	0	copy fasta	ATG101	chr12	52064978	52082495
ATG10_chr5_81967023_82261133	0/0	t0001	2366	43	25	7	8	0	3	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0002	2372	28	4	10	7	1	6	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0003	2365	23	16	5	0	0	2	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0004	2376	19	5	5	3	2	4	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/1	t0005	2367	16	3	6	0	3	3	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0006	2374	12	3	4	3	2	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	1/0	t0007	2367	11	2	0	2	0	6	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0008	2372	10	0	2	7	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0009	2368	7	6	1	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0010	2368	7	0	3	2	1	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0011	2367	6	0	3	0	0	3	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0012	2367	5	4	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0013	2366	3	1	0	1	1	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0014	2367	2	2	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0015	2378	2	1	1	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0016	2367	2	2	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0017	2367	2	0	0	0	2	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0018	2366	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0019	2367	1	0	1	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0020	2367	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0021	2364	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0022	2366	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0023	2368	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0024	2365	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0025	2369	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0026	2364	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0027	2373	1	0	0	1	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0028	2377	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0029	2368	1	0	0	1	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0030	2372	1	0	0	1	0	0	copy fasta	ATG10	chr5	81967023	82261133