JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGR_chr11_101024624_101134813	0/0	t0065	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0066	10237	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0067	10237	1	0	0	0	1	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0068	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0069	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0070	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0071	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0072	10237	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0073	10237	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0074	10237	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0075	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0076	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0077	10238	1	0	0	0	1	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0078	10237	1	0	0	0	0	1	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0079	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0080	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0081	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0082	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0083	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0084	10225	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0085	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0086	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0087	10237	1	0	1	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0088	10237	1	0	0	1	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0089	10238	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	0/0	t0090	10237	1	1	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGR_chr11_101024624_101134813	1/0	t0091	10236	1	0	0	0	0	0	copy fasta	PGR	chr11	101024624	101134813
PGS1_chr17_78373649_78429659	0/1	t0001	627	325	61	58	156	10	39	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0002	631	44	19	12	3	6	4	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	1/0	t0003	627	7	6	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0004	624	5	0	0	5	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0005	627	3	2	1	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0006	627	2	0	1	0	0	1	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0007	627	2	0	2	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0008	627	2	2	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0009	627	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0010	627	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0011	627	1	1	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0012	627	1	1	0	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0013	627	1	0	1	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0014	724	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0015	627	1	0	0	1	0	0	copy fasta	PGS1	chr17	78373649	78429659
PGS1_chr17_78373649_78429659	0/0	t0016	631	1	0	1	0	0	0	copy fasta	PGS1	chr17	78373649	78429659
PHACTR1_chr6_12711767_13292837	0/0	t0001	1173	40	35	4	0	1	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0002	1170	38	19	12	5	1	1	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0003	1171	23	7	10	3	0	3	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0004	1173	3	3	0	0	0	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0005	1173	1	1	0	0	0	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0006	1172	1	1	0	0	0	0	copy fasta	PHACTR1	chr6	12711767	13292837
PHACTR1_chr6_12711767_13292837	0/0	t0007	1173	1	1	0	0	0	0	copy fasta	PHACTR1	chr6	12711767	13292837