JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHACTR2_chr6_143672965_143836185	0/0	t0100	7667	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0101	7667	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0102	7680	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0103	7681	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0104	7678	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0105	7680	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0106	7694	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0107	7691	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0108	7702	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0109	7694	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0110	7699	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0111	7706	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0112	7692	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0113	7707	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0114	7707	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0115	7703	1	0	0	0	0	1	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0116	7698	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0117	7698	1	0	1	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0118	7693	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0119	7694	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0120	7691	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0121	7691	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0122	7687	1	0	0	0	0	1	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0123	7676	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0124	7676	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0125	7677	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0126	7711	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0127	7697	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0128	7697	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0129	7687	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0130	7704	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0131	7701	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0132	7697	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0133	7692	1	0	0	1	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0134	7702	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR2_chr6_143672965_143836185	0/0	t0135	7692	1	1	0	0	0	0	copy fasta	PHACTR2	chr6	143672965	143836185
PHACTR3_chr20_59599540_59852711	1/1	t0001	1057	127	23	33	47	3	19	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0002	1057	30	2	4	20	0	4	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0003	1058	26	12	5	5	2	2	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0004	1058	21	2	7	6	1	5	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0005	1056	10	0	3	4	0	3	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0006	1055	9	9	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0007	1059	5	2	1	1	0	1	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0008	1058	3	0	0	3	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0009	1056	3	2	0	1	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0010	1055	2	2	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0011	1056	2	1	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0012	1055	2	2	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0013	1058	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0014	1056	1	1	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711