JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHACTR3_chr20_59599540_59852711	0/0	t0015	1057	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0016	1056	1	1	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0017	1057	1	0	0	1	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0018	1055	1	1	0	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0019	1056	1	0	0	0	0	1	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0020	1057	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0021	1057	1	0	0	0	0	1	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR3_chr20_59599540_59852711	0/0	t0022	1057	1	0	1	0	0	0	copy fasta	PHACTR3	chr20	59599540	59852711
PHACTR4_chr1_28364740_28505364	0/1	t0001	3940	68	16	15	21	7	8	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0002	3945	39	3	13	12	4	7	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0003	3946	16	12	3	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0004	3957	8	8	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0005	3930	8	0	8	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0006	3961	7	7	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0007	3946	7	4	3	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0008	3949	5	4	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0009	3941	5	0	1	3	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0010	3961	4	0	2	0	1	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0011	3945	4	3	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0012	3946	3	0	2	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0013	3941	3	2	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0014	3939	3	1	1	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0015	3946	2	0	0	0	0	2	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0016	3945	2	0	1	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0017	3944	2	0	0	0	2	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0018	3956	2	0	2	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0019	3956	2	2	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0020	3946	2	0	2	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0021	3941	2	0	1	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0022	3941	2	0	0	1	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	1/0	t0023	3940	2	0	0	0	1	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0024	3955	2	2	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0025	3940	1	0	0	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0026	3945	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0027	3947	1	0	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0028	3947	1	0	0	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0029	3946	1	0	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0030	3946	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0031	3946	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0032	3955	1	0	0	0	1	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0033	3940	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0034	3958	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0035	3964	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0036	3956	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0037	3948	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0038	3947	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0039	3937	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0040	3941	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0041	3941	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0042	3941	1	0	1	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364