JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHACTR4_chr1_28364740_28505364	0/0	t0043	3943	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0044	3946	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0045	3940	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0046	3947	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0047	3946	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0048	3942	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0049	3940	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0050	3944	1	1	0	0	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0051	3939	1	0	0	0	0	1	copy fasta	PHACTR4	chr1	28364740	28505364
PHACTR4_chr1_28364740_28505364	0/0	t0052	3929	1	0	0	1	0	0	copy fasta	PHACTR4	chr1	28364740	28505364
PHAF1_chr16_67104941_67153544	0/0	t0001	1649	154	76	15	40	6	17	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	1/1	t0002	1649	62	4	14	30	4	8	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	t0003	1649	11	11	0	0	0	0	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	t0004	1649	1	0	1	0	0	0	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	t0005	1649	1	1	0	0	0	0	copy fasta	PHAF1	chr16	67104941	67153544
PHAF1_chr16_67104941_67153544	0/0	t0006	1649	1	0	0	0	0	1	copy fasta	PHAF1	chr16	67104941	67153544
PHAX_chr5_126595947_126632252	0/0	t0001	2425	133	17	34	62	7	13	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0002	2432	72	17	3	44	3	5	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0003	2424	34	1	2	30	0	1	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0004	2433	21	2	6	9	0	4	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0005	2423	19	15	1	0	0	3	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	1/0	t0006	2425	15	1	3	3	2	5	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0007	2431	13	7	4	2	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0008	2426	11	2	0	6	0	3	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0009	2432	8	3	0	4	0	1	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0010	2431	8	2	3	1	0	2	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/1	t0011	2425	5	0	0	0	1	3	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0012	2433	5	0	0	5	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0013	2425	2	0	0	2	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0014	2433	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0015	2430	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0016	2426	2	0	0	2	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0017	2432	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0018	2432	2	0	0	2	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0019	2432	2	0	1	0	1	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0020	2425	2	2	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0021	2432	1	0	0	1	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0022	2425	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0023	2432	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0024	2432	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0025	2432	1	0	1	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0026	2428	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0027	2431	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0028	2428	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0029	2428	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0030	2427	1	0	0	0	0	1	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0031	2423	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0032	2424	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0033	2417	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0034	2425	1	0	0	0	0	1	copy fasta	PHAX	chr5	126595947	126632252