JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHAX_chr5_126595947_126632252	0/0	t0035	2425	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0036	2426	1	0	1	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0037	2424	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0038	2425	1	1	0	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0039	2425	1	0	0	1	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0040	2424	1	0	0	1	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0041	2425	1	0	0	1	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHAX_chr5_126595947_126632252	0/0	t0042	2431	1	0	1	0	0	0	copy fasta	PHAX	chr5	126595947	126632252
PHB1_chr17_49399052_49419882	1/0	t0001	1016	181	20	33	107	5	15	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/1	t0002	1016	165	48	34	55	9	18	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0003	1016	76	11	8	45	2	10	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0004	1016	5	3	2	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0005	1016	4	3	1	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0006	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0007	1016	1	0	0	1	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0008	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0009	1016	1	0	0	0	0	1	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0010	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0011	1016	1	0	1	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0012	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0013	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0014	1016	1	0	1	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0015	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB1_chr17_49399052_49419882	0/0	t0016	1016	1	1	0	0	0	0	copy fasta	PHB1	chr17	49399052	49419882
PHB2_chr12_6960327_6975664	1/1	t0001	480	348	93	69	131	12	41	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	t0002	480	23	1	1	21	0	0	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	t0003	480	5	0	0	4	0	1	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	t0004	480	1	0	0	1	0	0	copy fasta	PHB2	chr12	6960327	6975664
PHB2_chr12_6960327_6975664	0/0	t0005	480	1	0	0	1	0	0	copy fasta	PHB2	chr12	6960327	6975664
PHC1_chr12_8909509_8946467	0/0	t0001	2376	194	38	35	94	5	22	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0002	2377	127	19	27	67	7	7	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0003	2376	20	17	3	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0004	2374	4	4	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0005	2376	3	2	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0006	2377	2	0	0	2	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0007	2377	2	0	0	2	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0008	2377	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0009	2376	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0010	2376	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0011	2376	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0012	2376	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0013	2376	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0014	2377	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0015	2377	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0016	2377	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0017	2376	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0018	2376	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0019	2377	1	0	0	1	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0020	2377	1	0	0	0	0	1	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0021	2377	1	0	1	0	0	0	copy fasta	PHC1	chr12	8909509	8946467