JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHC1_chr12_8909509_8946467	0/0	t0022	2377	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC1_chr12_8909509_8946467	0/0	t0023	2376	1	1	0	0	0	0	copy fasta	PHC1	chr12	8909509	8946467
PHC2_chr1_33318626_33436095	1/1	t0001	1414	89	8	23	43	5	8	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0002	1414	80	27	8	39	1	5	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0003	1414	67	2	8	50	0	7	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0004	1414	60	1	7	34	5	13	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0005	1414	32	10	7	5	1	9	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0006	1414	8	8	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0007	1414	3	3	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0008	1414	3	0	0	3	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0009	1418	3	3	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0010	1414	3	3	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0011	1414	2	2	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0012	1414	2	0	0	0	0	2	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0013	1414	2	0	2	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0014	1414	2	2	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0015	1414	2	2	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0016	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0017	1418	1	1	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0018	1414	1	0	1	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0019	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0020	1414	1	1	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0021	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0022	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0023	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0024	1414	1	1	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0025	1414	1	1	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0026	1414	1	1	0	0	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC2_chr1_33318626_33436095	0/0	t0027	1414	1	0	0	1	0	0	copy fasta	PHC2	chr1	33318626	33436095
PHC3_chr3_170082584_170186733	0/0	t0001	9662	73	5	17	40	6	5	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0002	9665	57	1	8	35	5	8	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	1/0	t0003	9665	36	13	8	11	1	2	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/1	t0004	9664	32	3	5	23	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0005	9665	16	0	0	16	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0006	9665	11	11	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0007	9664	10	1	7	2	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0008	9665	8	8	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0009	9662	8	1	3	0	1	3	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0010	9662	6	2	1	2	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0011	9662	5	0	0	5	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0012	9663	4	2	2	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0013	9662	3	0	3	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0014	9663	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0015	9665	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0016	9665	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0017	9666	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0018	9664	3	3	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0019	9665	3	2	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0020	9662	2	0	2	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0021	9662	2	0	0	0	0	2	copy fasta	PHC3	chr3	170082584	170186733