JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHC3_chr3_170082584_170186733	0/0	t0022	9665	2	0	2	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0023	9665	2	1	0	0	1	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0024	9665	2	0	0	1	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0025	9666	2	2	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0026	9665	2	0	0	2	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0027	9670	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0028	9670	1	0	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0029	9670	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0030	9662	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0031	9662	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0032	9662	1	0	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0033	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0034	9662	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0035	9662	1	0	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0036	9665	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0037	9662	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0038	9662	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0039	9662	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0040	9662	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0041	9665	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0042	9663	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0043	9662	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0044	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0045	9663	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0046	9665	1	0	0	0	0	1	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0047	9665	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0048	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0049	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0050	9665	1	0	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0051	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0052	9665	1	0	1	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0053	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0054	9663	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0055	9665	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0056	9664	1	0	0	1	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHC3_chr3_170082584_170186733	0/0	t0057	9664	1	1	0	0	0	0	copy fasta	PHC3	chr3	170082584	170186733
PHETA1_chr12_111355679_111374095	0/0	t0001	2368	180	29	24	111	3	13	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/1	t0002	2365	66	14	14	22	1	14	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0003	2368	60	24	2	25	0	9	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	1/0	t0004	2365	29	3	20	0	5	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0005	2368	10	9	1	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0006	2365	7	4	3	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0007	2368	4	0	0	4	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0008	2365	3	0	0	0	0	3	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0009	2365	3	0	0	0	1	2	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0010	2365	3	0	0	3	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0011	2368	2	0	0	0	0	2	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0012	2368	2	2	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0013	2368	2	2	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0014	2365	1	0	1	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095