JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHETA1_chr12_111355679_111374095	0/0	t0015	2368	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0016	2368	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0017	2365	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0018	2368	1	1	0	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0019	2368	1	0	0	0	0	1	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0020	2365	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0021	2365	1	0	1	0	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA1_chr12_111355679_111374095	0/0	t0022	2368	1	0	0	1	0	0	copy fasta	PHETA1	chr12	111355679	111374095
PHETA2_chr22_42069248_42084438	0/0	t0001	1556	252	37	46	138	8	23	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/1	t0002	1562	97	12	27	34	6	17	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0003	1562	22	21	1	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0004	1555	11	11	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0005	1556	6	4	2	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0006	1562	3	3	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0007	1556	2	0	0	2	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0008	1556	2	2	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0009	1556	2	1	1	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0010	1556	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0011	1556	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0012	1556	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0013	1556	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0014	1556	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0015	1556	1	0	1	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0016	1556	1	1	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	1/0	t0017	1556	1	0	0	0	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHETA2_chr22_42069248_42084438	0/0	t0018	1562	1	0	0	1	0	0	copy fasta	PHETA2	chr22	42069248	42084438
PHEX_chrX_22027325_22256310	0/0	t0001	4037	14	0	1	11	1	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0002	4037	8	0	1	5	0	2	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0003	4037	7	1	1	4	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0004	4037	6	0	2	3	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0005	4038	5	0	0	5	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0006	4038	5	0	1	3	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	1/1	t0007	4039	4	0	1	0	1	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0008	4037	4	0	1	1	0	2	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0009	4053	4	0	0	4	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0010	4039	4	0	1	3	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0011	4039	3	0	0	3	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0012	4036	3	0	0	2	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0013	4053	3	0	0	3	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0014	4036	2	0	0	1	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0015	4042	2	0	0	0	0	2	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0016	4036	2	0	0	1	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0017	4039	2	0	0	2	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0018	4063	2	0	0	2	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0019	4036	2	1	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0020	4045	2	1	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0021	4068	2	2	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0022	4063	2	0	2	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0023	4037	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0024	4018	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310