Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG10_chr5_81967023_82261133	0/0	t0031	2374	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0032	2377	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0033	2380	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0034	2366	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0035	2366	1	0	0	0	1	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0036	2366	1	0	0	1	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0037	2365	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0038	2367	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0039	2367	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0040	2367	1	0	0	1	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0041	2367	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0042	2363	1	0	0	0	1	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0043	2367	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0044	2366	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	t0045	2372	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG12_chr5_115823200_115846565	0/1	t0001	3617	134	26	29	49	9	20	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0002	3616	91	2	22	58	2	7	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	1/0	t0003	3618	65	2	8	48	2	4	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0004	3616	12	11	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0005	3616	11	6	2	0	0	3	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0006	3615	10	10	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0007	3617	7	0	0	0	2	5	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0008	3616	6	6	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0009	3619	6	0	0	5	0	1	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0010	3615	5	0	2	3	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0011	3616	4	4	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0012	3616	3	3	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0013	3617	3	0	2	0	0	1	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0014	3616	3	1	2	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0015	3617	2	1	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0016	3616	2	2	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0017	3617	2	0	0	0	0	2	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0018	3616	2	0	1	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0019	3616	2	2	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0020	3616	2	2	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0021	3616	2	2	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0022	3616	2	0	0	2	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0023	3617	1	0	0	0	0	1	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0024	3617	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0025	3616	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0026	3618	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0027	3618	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0028	3615	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0029	3616	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0030	3617	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0031	3617	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0032	3617	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0033	3618	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0034	3616	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0035	3617	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565