JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHEX_chrX_22027325_22256310	0/0	t0075	4069	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0076	4067	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0077	4068	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0078	4055	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0079	4052	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0080	4036	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0081	4017	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0082	4017	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0083	4040	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0084	4031	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0085	4036	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0086	4037	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0087	4038	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0088	4037	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0089	4045	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0090	4039	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0091	4037	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0092	4038	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0093	4054	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0094	4076	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0095	4074	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0096	4043	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0097	4051	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0098	4074	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0099	4070	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0100	4069	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0101	4070	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0102	4075	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0103	4049	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0104	4068	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0105	4054	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0106	4061	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0107	4057	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0108	4033	1	0	0	0	1	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0109	4055	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0110	4065	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0111	4060	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0112	4062	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0113	4046	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0114	4075	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0115	4063	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0116	4064	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0117	4067	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0118	4076	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0119	4046	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0120	4059	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0121	4066	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0122	4062	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0123	4060	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0124	4067	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310