JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHEX_chrX_22027325_22256310	0/0	t0125	4059	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0126	4078	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0127	4076	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0128	4058	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0129	4044	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0130	4063	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0131	4066	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0132	4067	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0133	4065	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0134	4081	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0135	4097	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0136	4065	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0137	4092	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0138	4066	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0139	4054	1	0	0	1	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0140	4024	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0141	4018	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0142	4037	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0143	4038	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0144	4036	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0145	4070	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0146	4064	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0147	4057	1	0	0	0	1	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0148	4057	1	0	0	0	1	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0149	4059	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0150	4065	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0151	4046	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0152	4077	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0153	4045	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0154	4070	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0155	4062	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0156	4071	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0157	4058	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0158	4072	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0159	4065	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0160	4064	1	0	1	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0161	4054	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0162	4054	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0163	4037	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0164	4073	1	1	0	0	0	0	copy fasta	PHEX	chrX	22027325	22256310
PHEX_chrX_22027325_22256310	0/0	t0165	4056	1	0	0	0	0	1	copy fasta	PHEX	chrX	22027325	22256310
PHF10_chr6_169698902_169729500	0/0	t0001	693	155	21	29	96	2	7	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	1/0	t0002	671	106	39	18	20	5	23	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/1	t0003	693	103	20	13	60	3	6	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0004	653	12	3	1	8	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0005	671	3	3	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0006	674	3	3	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0007	715	2	0	2	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0008	696	1	0	1	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0009	693	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500