JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF10_chr6_169698902_169729500	0/0	t0010	693	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0011	671	1	0	1	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0012	671	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0013	671	1	0	1	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0014	715	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0015	656	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0016	693	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF10_chr6_169698902_169729500	0/0	t0017	654	1	1	0	0	0	0	copy fasta	PHF10	chr6	169698902	169729500
PHF11_chr13_49490953_49533976	1/0	t0001	361	185	58	37	61	6	22	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/1	t0002	361	179	32	36	89	7	14	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	t0003	364	49	1	3	38	1	6	copy fasta	PHF11	chr13	49490953	49533976
PHF11_chr13_49490953_49533976	0/0	t0004	361	1	1	0	0	0	0	copy fasta	PHF11	chr13	49490953	49533976
PHF12_chr17_28900250_28956518	1/1	t0001	1492	224	74	46	68	8	26	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0002	1492	2	2	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0003	1492	1	0	0	0	0	1	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0004	1492	1	0	0	1	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0005	1492	1	0	0	0	0	1	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0006	1492	1	0	0	1	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0007	1492	1	1	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF12_chr17_28900250_28956518	0/0	t0008	1492	1	1	0	0	0	0	copy fasta	PHF12	chr17	28900250	28956518
PHF13_chr1_6608731_6629030	1/1	t0001	2730	132	16	34	66	4	10	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0002	2729	122	15	26	58	7	16	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0003	2729	98	16	16	46	5	15	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0004	2729	14	13	1	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0005	2730	10	10	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0006	2730	4	3	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0007	2729	3	3	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0008	2729	3	3	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0009	2729	3	3	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0010	2729	2	2	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0011	2729	2	2	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0012	2729	2	2	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0013	2729	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0014	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0015	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0016	2729	1	0	1	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0017	2730	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0018	2730	1	0	1	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0019	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0020	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0021	2729	1	0	0	0	0	1	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0022	2729	1	0	0	0	0	1	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0023	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0024	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0025	2729	1	1	0	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0026	2729	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0027	2730	1	0	0	1	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0028	2729	1	0	0	0	0	1	copy fasta	PHF13	chr1	6608731	6629030
PHF13_chr1_6608731_6629030	0/0	t0029	2730	1	0	1	0	0	0	copy fasta	PHF13	chr1	6608731	6629030
PHF14_chr7_10968872_11174618	1/1	t0001	581	277	86	55	100	8	26	copy fasta	PHF14	chr7	10968872	11174618