JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF14_chr7_10968872_11174618	0/0	t0002	581	5	0	0	5	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0003	581	4	0	4	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0004	581	2	0	2	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0005	581	2	0	1	0	0	1	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0006	581	2	2	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0007	581	2	2	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0008	581	1	0	0	1	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0009	581	1	1	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0010	581	1	0	0	0	0	1	copy fasta	PHF14	chr7	10968872	11174618
PHF14_chr7_10968872_11174618	0/0	t0011	581	1	1	0	0	0	0	copy fasta	PHF14	chr7	10968872	11174618
PHF19_chr9_120850651_120882188	0/1	t0001	2407	151	21	29	73	7	20	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	1/0	t0002	2407	135	27	15	83	1	8	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0003	2408	48	22	5	21	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0004	2412	29	4	12	6	3	4	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0005	2408	7	7	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0006	2408	6	4	2	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0007	2407	5	1	2	0	1	1	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0008	2408	5	5	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0009	2407	3	0	1	0	2	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0010	2407	2	0	1	0	0	1	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0011	2407	2	2	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0012	2407	2	0	0	2	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0013	2407	1	1	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0014	2407	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0015	2412	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0016	2407	1	0	0	0	0	1	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0017	2407	1	0	0	0	0	1	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0018	2407	1	1	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0019	2407	1	0	1	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0020	2407	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0021	2407	1	1	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0022	2407	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0023	2408	1	1	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0024	2412	1	0	0	1	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF19_chr9_120850651_120882188	0/0	t0025	2407	1	1	0	0	0	0	copy fasta	PHF19	chr9	120850651	120882188
PHF1_chr6_33406014_33421439	0/1	t0001	560	336	93	59	138	11	34	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	t0002	560	17	0	9	5	1	2	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	t0003	560	5	3	0	2	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	t0004	560	4	0	0	4	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF1_chr6_33406014_33421439	0/0	t0005	560	1	0	0	1	0	0	copy fasta	PHF1	chr6	33406014	33421439
PHF20L1_chr8_132770388_132853807	0/0	t0001	3180	121	31	13	68	1	8	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0002	3175	70	1	21	31	6	11	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/1	t0003	3180	62	12	6	36	3	4	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	1/0	t0004	3180	42	2	16	14	1	8	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0005	3179	41	29	10	0	1	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0006	3178	23	0	0	23	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0007	3181	8	8	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0008	3172	6	0	0	6	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0009	3180	5	0	3	0	2	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0010	3175	3	0	0	3	0	0	copy fasta	PHF20L1	chr8	132770388	132853807