JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF20L1_chr8_132770388_132853807	0/0	t0011	3168	2	0	0	2	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0012	3175	1	1	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0013	3175	1	0	0	1	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0014	3180	1	1	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0015	3180	1	0	0	0	0	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0016	3180	1	0	0	0	0	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0017	3180	1	0	1	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0018	3180	1	1	0	0	0	0	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0019	3175	1	0	0	0	0	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20L1_chr8_132770388_132853807	0/0	t0020	3175	1	0	0	0	0	1	copy fasta	PHF20L1	chr8	132770388	132853807
PHF20_chr20_35767015_35955370	1/0	t0001	2841	65	16	14	25	4	5	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0002	2841	49	16	2	18	2	11	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0003	2841	29	4	5	13	2	5	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0004	2841	17	10	5	0	1	1	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/1	t0005	2841	10	4	1	4	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0006	2841	6	4	2	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0007	2841	6	6	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0008	2841	5	1	4	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0009	2841	4	0	0	0	1	3	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0010	2841	2	2	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0011	2841	2	2	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0012	2841	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0013	2841	1	0	1	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0014	2841	1	0	0	0	0	1	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0015	2841	1	0	1	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0016	2841	1	0	1	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0017	2841	1	0	0	1	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0018	2841	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0019	2841	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0020	2841	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0021	2841	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF20_chr20_35767015_35955370	0/0	t0022	2841	1	1	0	0	0	0	copy fasta	PHF20	chr20	35767015	35955370
PHF21A_chr11_45924319_46126454	0/1	t0001	5410	48	6	15	16	4	6	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0002	5410	43	7	5	29	0	2	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0003	5408	37	4	11	11	3	8	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0004	5410	18	14	0	4	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0005	5408	13	4	6	0	0	3	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0006	5408	9	0	0	9	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0007	5412	7	0	4	3	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0008	5411	7	5	0	2	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0009	5412	7	0	1	4	0	2	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0010	5412	6	0	0	5	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0011	5412	5	5	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0012	5411	4	4	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0013	5413	3	0	1	0	1	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0014	5409	3	3	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0015	5410	3	3	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0016	5411	2	0	0	2	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0017	5410	2	0	0	2	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0018	5410	2	2	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454