JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF21A_chr11_45924319_46126454	0/0	t0019	5415	2	2	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0020	5410	2	0	1	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0021	5410	2	0	2	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0022	5411	2	2	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0023	5408	2	2	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0024	5404	2	1	0	0	1	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0025	5418	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0026	5416	1	0	1	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0027	5413	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0028	5415	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0029	5413	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0030	5413	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0031	5412	1	0	1	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0032	5414	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0033	5412	1	0	0	0	1	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0034	5412	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0035	5413	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0036	5415	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0037	5409	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0038	5411	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0039	5410	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0040	5412	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0041	5410	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0042	5410	1	0	1	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0043	5408	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0044	5409	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0045	5411	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0046	5412	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0047	5407	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0048	5408	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0049	5409	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0050	5409	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0051	5409	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0052	5409	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0053	5410	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0054	5411	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0055	5411	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0056	5411	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0057	5411	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0058	5410	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0059	5410	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0060	5408	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0061	5410	1	0	0	1	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0062	5408	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0063	5410	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0064	5407	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0065	5408	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0066	5409	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0067	5408	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0068	5408	1	0	1	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454