JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF21A_chr11_45924319_46126454	0/0	t0069	5409	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0070	5406	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	1/0	t0071	5406	1	0	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0072	5407	1	1	0	0	0	0	copy fasta	PHF21A	chr11	45924319	46126454
PHF21A_chr11_45924319_46126454	0/0	t0073	5402	1	0	0	0	0	1	copy fasta	PHF21A	chr11	45924319	46126454
PHF21B_chr22_44876162_45015005	0/1	t0001	2382	72	14	12	32	5	8	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0002	2382	56	7	14	27	4	4	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0003	2382	38	10	0	22	1	5	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0004	2382	15	7	0	8	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0005	2382	14	4	1	3	0	6	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0006	2382	13	10	3	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0007	2382	12	3	2	5	0	2	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0008	2382	7	4	1	0	0	2	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0009	2382	6	3	3	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0010	2382	5	0	5	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0011	2382	4	3	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0012	2382	4	0	1	0	0	3	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0013	2363	4	0	0	3	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0014	2382	4	2	1	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0015	2382	3	2	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0016	2382	3	3	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0017	2382	2	2	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0018	2382	2	2	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0019	2382	2	0	0	2	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0020	2382	2	0	0	0	0	2	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0021	2382	2	2	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0022	2382	2	0	0	2	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0023	2382	2	1	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0024	2382	2	1	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0025	2382	2	0	0	2	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0026	2382	1	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0027	2382	1	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0028	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0029	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0030	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0031	2382	1	0	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0032	2382	1	0	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0033	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0034	2382	1	0	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0035	2382	1	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0036	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0037	2382	1	0	0	0	0	1	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0038	2382	1	0	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0039	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	1/0	t0040	2381	1	0	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0041	2363	1	0	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0042	2363	1	0	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0043	2382	1	0	0	1	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0044	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0045	2382	1	0	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005