JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF21B_chr22_44876162_45015005	0/0	t0046	2382	1	1	0	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF21B_chr22_44876162_45015005	0/0	t0047	2382	1	0	1	0	0	0	copy fasta	PHF21B	chr22	44876162	45015005
PHF23_chr17_7230038_7244457	1/1	t0001	767	353	54	69	172	18	38	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	t0002	767	39	36	3	0	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	t0003	767	1	0	0	1	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF23_chr17_7230038_7244457	0/0	t0004	767	1	0	0	1	0	0	copy fasta	PHF23	chr17	7230038	7244457
PHF24_chr9_34953285_34987544	0/1	t0001	4555	132	15	11	89	5	11	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0002	4555	99	14	14	59	1	11	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0003	4552	52	1	29	1	6	15	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0004	4554	42	17	3	21	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0005	4555	23	5	9	3	2	4	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0006	4555	12	0	0	12	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0007	4554	9	2	1	6	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	1/0	t0008	4555	8	7	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0009	4555	6	6	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0010	4556	6	6	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0011	4542	6	1	3	0	1	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0012	4555	4	0	0	4	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0013	4555	4	2	0	2	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0014	4555	3	1	1	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0015	4555	3	1	0	1	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0016	4551	3	0	2	0	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0017	4555	2	0	0	2	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0018	4554	2	0	1	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0019	4555	2	0	0	2	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0020	4555	2	1	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0021	4555	2	2	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0022	4556	2	2	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0023	4555	2	0	2	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0024	4555	2	2	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0025	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0026	4539	1	0	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0027	4554	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0028	4555	1	0	0	0	1	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0029	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0030	4554	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0031	4555	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0032	4555	1	0	0	0	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0033	4552	1	0	0	0	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0034	4555	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0035	4555	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0036	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0037	4554	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0038	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0039	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0040	4555	1	0	0	0	0	1	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0041	4555	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0042	4554	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0043	4554	1	1	0	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0044	4552	1	0	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544