Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG12_chr5_115823200_115846565	0/0	t0036	3617	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0037	3615	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0038	3616	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0039	3616	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0040	3616	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0041	3617	1	0	0	0	1	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0042	3617	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0043	3617	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0044	3616	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0045	3616	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0046	3617	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0047	3618	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	t0048	3618	1	0	0	1	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG13_chr11_46612553_46679518	0/0	t0001	2592	107	44	28	18	8	9	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0002	2592	36	8	11	10	1	6	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/1	t0003	2592	24	0	3	17	0	3	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0004	2592	14	14	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0005	2592	7	7	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0006	2592	5	0	0	5	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0007	2592	3	3	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0008	2592	3	3	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0009	2592	3	2	1	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0010	2592	2	0	2	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	1/0	t0011	2594	2	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0012	2592	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0013	2592	1	0	0	0	0	1	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0014	2592	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0015	2592	1	0	0	1	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0016	2592	1	0	0	1	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0017	2592	1	0	0	1	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0018	2592	1	0	0	0	1	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0019	2592	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0020	2592	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0021	2592	1	0	1	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0022	2592	1	0	0	0	0	1	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	t0023	2592	1	0	0	1	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG14_chr14_55361391_55416830	1/1	t0001	3237	123	5	22	77	6	11	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0002	3246	101	19	11	57	6	8	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0003	3245	34	17	5	8	0	4	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0004	3246	17	0	0	17	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0005	3246	11	0	8	0	0	3	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0006	3241	9	9	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0007	3240	7	7	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0008	3237	6	1	4	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0009	3241	5	5	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0010	3243	4	4	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0011	3242	4	4	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0012	3246	3	0	0	0	0	3	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0013	3242	3	0	0	0	0	3	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0014	3242	3	3	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830