JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHKA1_chrX_72573814_72719306	0/0	t0010	2615	1	0	1	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0011	2615	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0012	2615	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0013	2615	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0014	2614	1	0	0	1	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA1_chrX_72573814_72719306	0/0	t0015	2615	1	1	0	0	0	0	copy fasta	PHKA1	chrX	72573814	72719306
PHKA2_chrX_18887298_18989114	1/1	t0001	1370	185	56	26	78	7	16	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0002	1371	4	1	0	2	0	1	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0003	1370	3	2	1	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0004	1370	2	2	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0005	1369	2	0	1	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0006	1370	1	0	0	0	0	1	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0007	1371	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0008	1371	1	0	0	1	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0009	1369	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKA2_chrX_18887298_18989114	0/0	t0010	1374	1	1	0	0	0	0	copy fasta	PHKA2	chrX	18887298	18989114
PHKB_chr16_47456331_47706523	0/1	t0001	2178	47	28	5	4	2	7	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0002	2177	35	30	5	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0003	2177	4	4	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0004	2175	3	2	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0005	2177	2	0	2	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	1/0	t0006	2178	2	0	1	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0007	2178	1	0	0	0	0	1	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0008	2178	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0009	2177	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0010	2177	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKB_chr16_47456331_47706523	0/0	t0011	2177	1	1	0	0	0	0	copy fasta	PHKB	chr16	47456331	47706523
PHKG1_chr7_56075295_56097952	1/1	t0001	911	343	88	55	165	8	25	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0002	911	60	7	23	12	5	13	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0003	911	11	0	0	11	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0004	911	1	0	0	0	0	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0005	911	1	0	0	0	1	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0006	911	1	0	0	0	0	1	copy fasta	PHKG1	chr7	56075295	56097952
PHKG1_chr7_56075295_56097952	0/0	t0007	911	1	1	0	0	0	0	copy fasta	PHKG1	chr7	56075295	56097952
PHKG2_chr16_30743425_30766176	0/0	t0001	4155	103	37	18	21	4	23	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0002	4157	88	8	25	48	3	4	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/1	t0003	4157	17	2	8	0	2	4	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0004	4155	9	9	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	1/0	t0005	4164	9	7	1	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0006	4154	5	4	0	0	0	1	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0007	4157	4	0	3	0	1	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0008	4164	4	4	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0009	4155	3	3	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0010	4155	2	2	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0011	4157	1	0	1	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0012	4154	1	1	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0013	4156	1	0	1	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0014	4156	1	0	1	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0015	4156	1	1	0	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176
PHKG2_chr16_30743425_30766176	0/0	t0016	4157	1	0	1	0	0	0	copy fasta	PHKG2	chr16	30743425	30766176