JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHLDA1_chr12_76020447_76036776	0/0	t0037	4708	2	1	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0038	4709	2	0	0	0	0	2	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0039	4708	2	0	0	2	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0040	4708	2	0	2	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0041	4708	2	1	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0042	4708	2	0	1	0	1	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0043	4709	2	1	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0044	4709	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0045	4710	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0046	4709	2	0	2	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0047	4711	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0048	4709	2	0	0	0	2	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0049	4708	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0050	4707	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0051	4708	2	2	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0052	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0053	4709	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0054	4709	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0055	4720	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0056	4711	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0057	4710	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0058	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0059	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0060	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0061	4707	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0062	4707	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0063	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0064	4707	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0065	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0066	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0067	4710	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0068	4708	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0069	4707	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0070	4708	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0071	4706	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0072	4707	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0073	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0074	4708	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0075	4708	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0076	4709	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0077	4707	1	0	1	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0078	4708	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0079	4708	1	0	0	0	0	1	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0080	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0081	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0082	4708	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0083	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0084	4706	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0085	4707	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0086	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776