JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHLDA1_chr12_76020447_76036776	0/0	t0137	4707	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0138	4705	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0139	4705	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0140	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0141	4707	1	0	0	1	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA1_chr12_76020447_76036776	0/0	t0142	4708	1	1	0	0	0	0	copy fasta	PHLDA1	chr12	76020447	76036776
PHLDA2_chr11_2923273_2934420	0/1	t0001	462	332	92	63	122	16	38	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0002	462	35	1	10	16	2	6	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0003	462	1	0	0	1	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0004	462	1	0	0	1	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0005	462	1	1	0	0	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0006	462	1	1	0	0	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0007	462	1	0	0	1	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0008	462	1	0	1	0	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0009	462	1	0	0	1	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA2_chr11_2923273_2934420	0/0	t0010	462	1	1	0	0	0	0	copy fasta	PHLDA2	chr11	2923273	2934420
PHLDA3_chr1_201459278_201474188	0/0	t0001	2373	72	6	8	51	1	6	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	1/0	t0002	2366	54	1	5	36	5	6	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0003	2374	54	4	25	18	4	3	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0004	2372	42	1	9	32	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0005	2366	28	3	4	15	0	6	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0006	2372	25	7	7	7	3	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0007	2372	14	0	0	14	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0008	2368	9	6	1	0	0	2	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0009	2372	8	2	1	5	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/1	t0010	2374	8	0	3	4	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0011	2368	7	4	1	0	1	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0012	2370	6	6	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0013	2366	6	5	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0014	2372	5	3	1	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0015	2373	4	0	0	4	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0016	2375	4	0	0	0	0	4	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0017	2368	4	3	0	0	1	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0018	2372	3	3	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0019	2366	3	0	0	3	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0020	2372	3	3	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0021	2375	3	0	0	0	1	2	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0022	2374	3	0	0	3	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0023	2372	2	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0024	2366	2	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0025	2372	2	2	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0026	2373	2	0	0	2	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0027	2366	2	0	0	1	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0028	2366	2	0	0	1	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0029	2366	2	0	0	2	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0030	2373	2	2	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0031	2372	2	0	2	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0032	2366	2	0	0	2	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0033	2372	2	2	0	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0034	2372	2	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188