JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PHLDA3_chr1_201459278_201474188	0/0	t0035	2372	2	2	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0036	2370	2	2	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0037	2372	2	0	1	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0038	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0039	2373	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0040	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0041	2366	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0042	2366	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0043	2373	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0044	2373	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0045	2366	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0046	2372	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0047	2373	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0048	2373	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0049	2370	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0050	2372	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0051	2373	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0052	2372	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0053	2373	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0054	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0055	2366	1	0	0	1	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0056	2373	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0057	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0058	2366	1	0	0	1	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0059	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0060	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0061	2366	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0062	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0063	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0064	2366	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0065	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0066	2373	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0067	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0068	2370	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0069	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0070	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0071	2368	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0072	2368	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0073	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0074	2370	1	0	0	1	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0075	2368	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0076	2375	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0077	2368	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0078	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0079	2375	1	0	0	0	1	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0080	2368	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0081	2373	1	0	1	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0082	2372	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0083	2372	1	0	0	1	0	copy fasta	PHLDA3	chr1	201459278	201474188
PHLDA3_chr1_201459278_201474188	0/0	t0084	2388	1	1	0	0	0	copy fasta	PHLDA3	chr1	201459278	201474188