Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATG14_chr14_55361391_55416830	0/0	t0015	3245	2	2	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0016	3246	2	0	0	0	0	2	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0017	3246	2	0	0	2	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0018	3237	2	0	0	0	2	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0019	3241	2	2	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0020	3241	2	0	2	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0021	3238	2	2	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0022	3241	2	0	2	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0023	3246	2	2	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0024	3245	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0025	3245	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0026	3246	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0027	3246	1	0	0	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0028	3246	1	0	1	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0029	3243	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0030	3237	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0031	3237	1	0	1	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0032	3237	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0033	3237	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0034	3237	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0035	3241	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0036	3241	1	0	1	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0037	3237	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0038	3216	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0039	3237	1	0	0	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0040	3246	1	0	0	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	t0041	3237	1	0	1	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG16L1_chr2_233246673_233300669	1/1	t0001	1475	106	9	20	67	1	7	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0002	1474	74	19	23	14	6	12	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0003	1475	72	32	8	19	6	7	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0004	1475	31	8	2	15	1	5	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0005	1474	29	0	0	28	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0006	1475	9	9	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0007	1475	9	0	0	8	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0008	1475	4	4	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0009	1475	3	3	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0010	1474	2	2	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0011	1475	2	2	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0012	1475	2	2	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0013	1474	1	1	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0014	1474	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0015	1475	1	1	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0016	1475	1	0	1	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0017	1475	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0018	1474	1	1	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0019	1475	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0020	1475	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0021	1475	1	1	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0022	1475	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	t0023	1475	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669