JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHLDB1_chr11_118602615_118663028	0/1	t0001	1313	121	34	22	42	5	17	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0002	1312	95	14	19	53	2	7	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0003	1312	46	1	13	26	2	4	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0004	1312	18	5	3	8	0	2	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	1/0	t0005	1312	14	3	2	3	2	3	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0006	1312	12	11	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0007	1312	12	7	1	3	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0008	1313	11	0	2	6	0	3	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0009	1313	4	3	0	0	0	1	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0010	1313	4	3	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0011	1313	3	0	0	3	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0012	1313	2	0	0	2	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0013	1312	2	1	1	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0014	1312	2	0	0	0	0	2	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0015	1312	2	0	0	2	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0016	1313	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0017	1313	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0018	1313	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0019	1312	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0020	1312	1	0	0	0	1	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0021	1312	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0022	1312	1	0	0	1	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB1_chr11_118602615_118663028	0/0	t0023	1312	1	1	0	0	0	0	copy fasta	PHLDB1	chr11	118602615	118663028
PHLDB2_chr3_111854265_111981517	0/0	t0001	2281	96	20	21	46	2	7	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0002	2281	38	6	10	17	1	4	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0003	2281	31	13	0	10	0	8	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/1	t0004	2281	26	4	8	8	5	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0005	2281	17	0	11	0	2	4	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0006	2281	10	10	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0007	2281	10	0	3	3	2	2	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0008	2283	7	7	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0009	2281	7	4	1	1	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0010	2283	6	6	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0011	2283	6	4	2	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0012	2283	5	0	4	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0013	2281	3	3	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0014	2281	3	0	2	1	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0015	2281	3	3	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0016	2281	3	3	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0017	2281	2	0	1	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0018	2281	2	0	0	2	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0019	2283	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0020	2281	1	0	0	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	1/0	t0021	2281	1	0	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0022	2281	1	0	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0023	2283	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0024	2281	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0025	2281	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0026	2283	1	0	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0027	2281	1	1	0	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517