JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHLDB2_chr3_111854265_111981517	0/0	t0028	2281	1	0	0	0	0	1	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB2_chr3_111854265_111981517	0/0	t0029	2281	1	0	1	0	0	0	copy fasta	PHLDB2	chr3	111854265	111981517
PHLDB3_chr19_43470103_43509746	0/0	t0001	480	142	18	22	77	4	21	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	1/0	t0002	480	141	31	21	66	5	17	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/1	t0003	480	51	20	11	6	5	8	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0004	480	35	0	13	21	0	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0005	480	15	14	1	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0006	480	7	7	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0007	480	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0008	480	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0009	480	1	0	0	1	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0010	480	1	1	0	0	0	0	copy fasta	PHLDB3	chr19	43470103	43509746
PHLDB3_chr19_43470103_43509746	0/0	t0011	480	1	0	0	0	0	1	copy fasta	PHLDB3	chr19	43470103	43509746
PHLPP1_chr18_62710541_62985433	1/1	t0001	1146	140	44	25	51	5	13	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0002	1146	9	9	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0003	1149	8	7	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0004	1156	5	4	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0005	1151	4	2	1	1	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0006	1146	4	0	1	1	0	2	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0007	1151	3	3	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0008	1146	3	0	2	0	1	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0009	1151	3	3	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0010	1146	2	2	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0011	1154	2	2	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0012	1146	2	2	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0013	1146	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0014	1136	1	0	0	1	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0015	1146	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0016	1146	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0017	1146	1	0	1	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0018	1159	1	0	0	0	0	1	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP1_chr18_62710541_62985433	0/0	t0019	1151	1	1	0	0	0	0	copy fasta	PHLPP1	chr18	62710541	62985433
PHLPP2_chr16_71639924_71729701	0/0	t0001	4345	91	2	21	56	3	9	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0002	4336	87	6	21	40	2	18	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/1	t0003	4336	42	15	13	4	3	6	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	1/0	t0004	4346	34	22	8	3	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0005	4345	16	15	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0006	4345	12	12	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0007	4336	7	7	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0008	4336	5	0	0	0	0	5	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0009	4336	4	0	0	4	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0010	4345	3	3	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0011	4332	2	0	0	2	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0012	4345	2	2	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0013	4336	2	0	0	2	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0014	4345	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0015	4336	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0016	4345	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0017	4345	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0018	4345	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701