JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHLPP2_chr16_71639924_71729701	0/0	t0019	4336	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0020	4336	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0021	4336	1	0	0	0	0	1	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0022	4345	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0023	4345	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0024	4346	1	0	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0025	4337	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0026	4337	1	0	0	0	1	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0027	4332	1	0	0	0	1	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0028	4346	1	1	0	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0029	4336	1	0	0	1	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHLPP2_chr16_71639924_71729701	0/0	t0030	4336	1	0	1	0	0	0	copy fasta	PHLPP2	chr16	71639924	71729701
PHOSPHO1_chr17_49218366_49235787	1/1	t0001	1268	259	53	44	131	9	20	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0002	1268	99	23	21	39	1	15	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0003	1268	55	19	14	7	4	11	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0004	1268	2	0	2	0	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0005	1268	1	0	1	0	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0006	1268	1	0	0	1	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0007	1268	1	1	0	0	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0008	1268	1	0	0	1	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO1_chr17_49218366_49235787	0/0	t0009	1268	1	0	0	1	0	0	copy fasta	PHOSPHO1	chr17	49218366	49235787
PHOSPHO2_chr2_169689469_169706708	1/0	t0001	396	392	81	51	205	13	41	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/1	t0002	396	21	1	6	11	0	2	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0003	396	6	0	5	0	0	1	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0004	396	4	4	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0005	396	4	4	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0006	396	3	3	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0007	396	2	0	1	0	1	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0008	396	2	2	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0009	396	1	0	1	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOSPHO2_chr2_169689469_169706708	0/0	t0010	396	1	1	0	0	0	0	copy fasta	PHOSPHO2	chr2	169689469	169706708
PHOX2A_chr11_72234077_72249176	1/1	t0001	845	341	89	58	136	14	42	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0002	845	15	2	5	8	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0003	845	5	5	0	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0004	845	1	1	0	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0005	845	1	1	0	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0006	845	1	0	1	0	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0007	845	1	0	0	1	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2A_chr11_72234077_72249176	0/0	t0008	845	1	0	0	1	0	0	copy fasta	PHOX2A	chr11	72234077	72249176
PHOX2B_chr4_41739082_41753725	1/1	t0001	1841	182	14	30	112	3	21	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0002	1842	80	19	12	38	2	9	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0003	1841	36	19	10	4	2	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0004	1841	20	16	2	0	1	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0005	1841	18	0	8	0	0	10	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0006	1841	11	9	1	0	1	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0007	1841	8	1	5	0	1	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0008	1841	7	0	0	7	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0009	1841	6	6	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0010	1841	2	2	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0011	1841	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725