JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHOX2B_chr4_41739082_41753725	0/0	t0012	1842	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0013	1841	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0014	1842	1	0	0	1	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0015	1841	1	0	0	0	0	1	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0016	1841	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0017	1841	1	0	0	1	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0018	1841	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0019	1841	1	0	1	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0020	1841	1	0	1	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0021	1841	1	1	0	0	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHOX2B_chr4_41739082_41753725	0/0	t0022	1841	1	0	0	1	0	0	copy fasta	PHOX2B	chr4	41739082	41753725
PHPT1_chr9_136844409_136856024	1/1	t0001	200	342	82	80	122	16	40	copy fasta	PHPT1	chr9	136844409	136856024
PHPT1_chr9_136844409_136856024	0/0	t0002	200	2	0	0	0	0	2	copy fasta	PHPT1	chr9	136844409	136856024
PHRF1_chr11_571470_617222	0/0	t0001	590	186	32	36	82	8	28	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0002	590	54	31	16	2	4	1	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0003	590	15	10	5	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0004	590	5	5	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/1	t0005	590	5	0	3	0	0	1	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0006	590	4	0	0	4	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0007	590	2	0	0	2	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0008	590	2	2	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0009	590	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0010	512	1	1	0	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0011	590	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0012	590	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0013	590	1	0	1	0	0	0	copy fasta	PHRF1	chr11	571470	617222
PHRF1_chr11_571470_617222	0/0	t0014	590	1	0	0	1	0	0	copy fasta	PHRF1	chr11	571470	617222
PHTF1_chr1_113691831_113764486	0/1	t0001	1367	200	42	36	82	7	32	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0002	1366	80	3	15	54	3	5	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0003	1366	21	5	3	8	2	3	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0004	1367	6	3	2	1	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0005	1366	6	6	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0006	1367	3	3	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0007	1370	3	3	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0008	1367	2	0	0	2	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0009	1367	2	0	1	0	1	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0010	1367	2	2	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	1/0	t0011	1369	1	0	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0012	1370	1	1	0	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0013	1366	1	0	0	1	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0014	1367	1	0	1	0	0	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF1_chr1_113691831_113764486	0/0	t0015	1367	1	0	0	0	1	0	copy fasta	PHTF1	chr1	113691831	113764486
PHTF2_chr7_77793773_77962225	1/1	t0001	2582	221	52	45	89	10	23	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0002	2582	51	9	10	20	1	11	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0003	2582	6	6	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0004	2582	5	0	2	0	2	1	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0005	2584	4	3	1	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0006	2582	3	3	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0007	2582	3	3	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0008	2582	2	0	0	2	0	0	copy fasta	PHTF2	chr7	77793773	77962225