JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHTF2_chr7_77793773_77962225	0/0	t0009	2582	2	1	1	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0010	2582	2	2	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0011	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0012	2582	1	0	0	1	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0013	2582	1	0	1	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0014	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0015	2582	1	0	0	0	0	1	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0016	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0017	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0018	2582	1	0	0	0	1	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0019	2582	1	0	0	0	0	1	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0020	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0021	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0022	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0023	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0024	2582	1	1	0	0	0	0	copy fasta	PHTF2	chr7	77793773	77962225
PHTF2_chr7_77793773_77962225	0/0	t0025	2582	1	0	0	0	0	1	copy fasta	PHTF2	chr7	77793773	77962225
PHYHD1_chr9_128915982_128947038	0/1	t0001	1172	158	40	30	73	4	10	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	1/0	t0002	1172	152	8	39	66	13	25	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0003	1172	25	1	2	16	0	6	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0004	1172	24	22	2	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0005	1172	16	15	1	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0006	1166	12	0	0	10	0	2	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0007	1172	5	5	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0008	1172	2	2	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0009	1172	2	0	0	1	1	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0010	1172	1	0	1	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0011	1172	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0012	1172	1	1	0	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0013	1172	1	0	1	0	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0014	1172	1	0	0	0	0	1	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0015	1172	1	0	0	0	0	1	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0016	1172	1	0	0	1	0	0	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHD1_chr9_128915982_128947038	0/0	t0017	1166	1	0	0	0	0	1	copy fasta	PHYHD1	chr9	128915982	128947038
PHYHIPL_chr10_59171643_59252770	0/0	t0001	2392	153	72	19	45	1	16	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0002	2392	34	1	1	24	1	7	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0003	2392	4	3	1	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0004	2391	3	3	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0005	2392	2	2	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0006	2392	1	1	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0007	2392	1	1	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0008	2392	1	1	0	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0009	2392	1	0	0	0	0	1	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0010	2392	1	0	0	1	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIPL_chr10_59171643_59252770	0/0	t0011	2392	1	0	1	0	0	0	copy fasta	PHYHIPL	chr10	59171643	59252770
PHYHIP_chr8_22214703_22237099	1/1	t0001	1984	253	63	43	96	14	35	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0002	1984	107	4	18	75	1	9	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0003	1984	17	7	7	0	0	3	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0004	1984	12	0	9	3	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0005	1984	11	0	0	11	0	0	copy fasta	PHYHIP	chr8	22214703	22237099