JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHYHIP_chr8_22214703_22237099	0/0	t0006	1984	6	6	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0007	1984	5	4	1	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0008	1984	5	5	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0009	1984	3	3	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0010	1984	3	0	0	3	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0011	1984	2	0	2	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0012	1984	2	1	1	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0013	1984	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0014	1984	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0015	1984	1	0	0	1	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0016	1984	1	0	1	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0017	1984	1	0	0	0	0	1	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0018	1984	1	1	0	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0019	1984	1	0	1	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0020	1984	1	0	0	0	1	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0021	1984	1	0	0	1	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYHIP_chr8_22214703_22237099	0/0	t0022	1984	1	0	1	0	0	0	copy fasta	PHYHIP	chr8	22214703	22237099
PHYH_chr10_13272799_13305064	0/0	t0001	524	179	46	24	77	9	23	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	1/1	t0002	525	156	18	41	72	5	18	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0003	524	89	25	13	41	4	6	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0004	524	6	0	0	6	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0005	525	3	1	0	1	0	1	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0006	524	2	2	0	0	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0007	523	1	0	0	1	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0008	525	1	0	0	1	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYH_chr10_13272799_13305064	0/0	t0009	524	1	0	0	1	0	0	copy fasta	PHYH	chr10	13272799	13305064
PHYKPL_chr5_178203471_178237802	1/1	t0001	729	280	70	37	145	4	22	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0002	729	107	9	30	39	8	21	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0003	729	38	17	9	9	2	1	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0004	729	5	0	0	1	1	3	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0005	729	3	0	3	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0006	729	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0007	729	1	0	1	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0008	729	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0009	729	1	0	0	1	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0010	729	1	1	0	0	0	0	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0011	729	1	0	0	0	0	1	copy fasta	PHYKPL	chr5	178203471	178237802
PHYKPL_chr5_178203471_178237802	0/0	t0012	729	1	0	0	0	1	0	copy fasta	PHYKPL	chr5	178203471	178237802
PI15_chr8_74819534_74860029	1/0	t0001	5959	173	19	31	96	6	20	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0002	5959	25	3	7	1	4	10	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0003	5959	19	9	4	5	1	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0004	5959	14	0	0	14	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0005	5958	11	11	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0006	5959	8	1	2	3	0	2	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0007	5959	7	5	2	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0008	5959	5	0	3	0	2	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0009	5959	5	4	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0010	5959	4	0	2	2	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/1	t0011	5963	4	0	0	3	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0012	5959	4	4	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029