JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PI15_chr8_74819534_74860029	0/0	t0013	5961	3	3	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0014	5959	3	0	1	0	2	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0015	5959	3	3	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0016	5955	3	2	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0017	5959	3	3	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0018	5959	3	3	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0019	5959	3	2	0	0	0	1	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0020	5961	2	2	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0021	5959	2	0	0	0	0	2	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0022	5959	2	0	0	2	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0023	5959	2	0	0	2	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0024	5959	2	0	2	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0025	5959	2	2	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0026	5959	2	0	1	0	0	1	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0027	5959	2	1	0	0	0	1	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0028	5959	1	0	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0029	5961	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0030	5961	1	0	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0031	5963	1	0	0	1	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0032	5959	1	0	0	0	0	1	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0033	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0034	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0035	5883	1	0	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0036	5959	1	0	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0037	5959	1	0	0	1	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0038	5959	1	0	0	1	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0039	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0040	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0041	5959	1	0	1	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0042	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0043	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0044	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0045	5959	1	0	0	1	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0046	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0047	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0048	5959	1	1	0	0	0	0	copy fasta	PI15	chr8	74819534	74860029
PI15_chr8_74819534_74860029	0/0	t0049	5959	1	0	0	0	1	0	copy fasta	PI15	chr8	74819534	74860029
PI16_chr6_36949738_36969837	1/1	t0001	494	249	75	28	114	4	26	copy fasta	PI16	chr6	36949738	36969837
PI16_chr6_36949738_36969837	0/0	t0002	494	177	23	38	88	10	18	copy fasta	PI16	chr6	36949738	36969837
PI3_chr20_45169902_45181544	1/1	t0001	197	392	82	68	190	12	38	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	t0002	197	31	10	9	6	2	4	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	t0003	197	2	2	0	0	0	0	copy fasta	PI3	chr20	45169902	45181544
PI3_chr20_45169902_45181544	0/0	t0004	197	1	0	1	0	0	0	copy fasta	PI3	chr20	45169902	45181544
PI4K2A_chr10_97635671_97681434	1/1	t0001	2765	121	22	28	50	6	13	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0002	2765	74	8	16	32	4	14	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0003	2768	50	10	11	19	4	6	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0004	2765	38	2	8	28	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0005	2765	10	10	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0006	2765	9	9	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0007	2765	9	8	1	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434