JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PI4K2A_chr10_97635671_97681434	0/0	t0008	2766	5	5	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0009	2763	4	3	1	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0010	2763	4	4	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0011	2765	2	0	0	2	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0012	2765	2	0	0	0	0	2	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0013	2765	2	2	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0014	2768	2	2	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0015	2768	2	2	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0016	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0017	2768	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0018	2765	1	0	0	0	0	1	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0019	2766	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0020	2765	1	0	1	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0021	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0022	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0023	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0024	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0025	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0026	2765	1	0	0	1	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0027	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0028	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0029	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0030	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2A_chr10_97635671_97681434	0/0	t0031	2765	1	1	0	0	0	0	copy fasta	PI4K2A	chr10	97635671	97681434
PI4K2B_chr4_25229033_25284204	0/0	t0001	2148	95	17	16	51	1	10	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0002	2148	94	25	13	46	1	9	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/1	t0003	2150	74	4	19	34	3	13	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0004	2149	44	0	4	40	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	1/0	t0005	2149	43	11	11	13	1	6	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0006	2149	13	0	5	3	1	4	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0007	2148	11	7	3	0	1	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0008	2151	8	0	0	8	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0009	2149	8	6	2	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0010	2148	7	6	1	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0011	2144	7	6	0	0	0	1	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0012	2144	6	6	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0013	2150	5	0	3	1	0	1	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0014	2149	4	3	1	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0015	2147	3	1	2	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0016	2150	2	0	0	2	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0017	2148	2	0	0	2	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0018	2149	2	2	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0019	2144	2	2	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0020	2149	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0021	2147	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0022	2148	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0023	2143	1	1	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0024	2149	1	0	0	1	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4K2B_chr4_25229033_25284204	0/0	t0025	2143	1	1	0	0	0	0	copy fasta	PI4K2B	chr4	25229033	25284204
PI4KA_chr22_20702691_20863811	1/1	t0001	443	260	73	44	113	4	24	copy fasta	PI4KA	chr22	20702691	20863811