JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PI4KA_chr22_20702691_20863811	0/0	t0002	443	31	5	10	6	6	4	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0003	443	29	1	4	15	2	7	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0004	443	3	0	0	3	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0005	443	3	0	3	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0006	443	3	3	0	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0007	443	2	0	2	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0008	443	1	0	0	0	0	1	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0009	443	1	0	0	1	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KA_chr22_20702691_20863811	0/0	t0010	443	1	0	1	0	0	0	copy fasta	PI4KA	chr22	20702691	20863811
PI4KB_chr1_151286804_151332416	0/1	t0001	1223	250	59	52	93	13	32	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0002	1227	46	1	6	38	0	1	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0003	1227	7	7	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	1/0	t0004	1223	7	6	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0005	1227	3	0	0	0	1	2	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0006	1227	3	2	1	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0007	1227	3	0	0	0	0	3	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0008	1223	2	2	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0009	1223	1	0	1	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0010	1223	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0011	1223	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0012	1223	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0013	1223	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0014	1223	1	1	0	0	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0015	1223	1	0	0	0	0	1	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0016	1227	1	0	0	1	0	0	copy fasta	PI4KB	chr1	151286804	151332416
PI4KB_chr1_151286804_151332416	0/0	t0017	1227	1	0	0	0	0	1	copy fasta	PI4KB	chr1	151286804	151332416
PIANP_chr12_6688791_6705815	1/0	t0001	1881	263	66	61	94	11	30	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/1	t0002	1881	22	1	10	0	4	6	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0003	1882	11	2	3	1	1	4	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0004	1881	8	6	2	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0005	1880	8	8	0	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0006	1881	5	5	0	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0007	1881	5	5	0	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0008	1881	3	3	0	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0009	1881	3	0	0	3	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0010	1881	2	0	1	1	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0011	1881	1	0	1	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0012	1881	1	0	1	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0013	1881	1	0	0	1	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0014	1881	1	0	1	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0015	1881	1	0	1	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0016	1882	1	0	0	0	0	1	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0017	1881	1	0	0	0	0	1	copy fasta	PIANP	chr12	6688791	6705815
PIANP_chr12_6688791_6705815	0/0	t0018	1882	1	0	1	0	0	0	copy fasta	PIANP	chr12	6688791	6705815
PIAS1_chr15_68049315_68198847	0/1	t0001	6023	69	15	18	21	5	9	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0002	6023	41	18	9	5	3	6	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0003	6023	22	0	6	14	1	1	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0004	6023	19	1	7	10	0	1	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0005	6023	18	17	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0006	6023	8	0	7	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847