JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PIAS1_chr15_68049315_68198847	0/0	t0007	6023	7	0	0	7	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0008	6023	7	5	1	0	0	1	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0009	6023	4	0	0	4	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0010	6023	4	4	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0011	6047	4	0	2	0	1	1	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0012	6023	4	4	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0013	6026	3	0	3	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0014	6023	3	0	0	3	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0015	6023	3	3	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0016	6024	3	3	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0017	6023	3	3	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0018	6023	2	1	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	1/0	t0019	6025	2	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0020	6023	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0021	6023	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0022	6023	2	0	0	1	0	1	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0023	6023	2	2	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0024	6023	2	0	2	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0025	6023	1	0	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0026	6019	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0027	6019	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0028	6023	1	0	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0029	6019	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0030	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0031	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0032	6024	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0033	6023	1	0	0	0	1	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0034	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0035	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0036	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0037	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0038	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0039	6023	1	0	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0040	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0041	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0042	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0043	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0044	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0045	6023	1	0	0	1	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0046	6023	1	0	0	0	1	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0047	6023	1	1	0	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS1_chr15_68049315_68198847	0/0	t0048	6023	1	0	1	0	0	0	copy fasta	PIAS1	chr15	68049315	68198847
PIAS2_chr18_46798218_46922507	0/0	t0001	9378	15	0	6	8	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0002	9378	11	1	2	4	1	3	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0003	9378	5	1	0	4	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0004	9379	4	0	0	4	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0005	9378	4	0	0	4	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0006	9371	3	0	2	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0007	9383	3	0	0	3	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0008	9380	3	0	0	3	0	0	copy fasta	PIAS2	chr18	46798218	46922507