JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	EAS	SAS	tseq	genename	chr	start	end
PIAS2_chr18_46798218_46922507	0/0	t0109	9414	1	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0110	9417	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0111	9419	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0112	9368	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0113	9394	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0114	9412	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0115	9414	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0116	9416	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0117	9423	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0118	9422	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0119	9426	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0120	9381	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0121	9380	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0122	9382	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0123	9391	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0124	9406	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0125	9409	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0126	9383	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0127	9397	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0128	9402	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0129	9414	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0130	9379	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0131	9378	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0132	9378	1	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0133	9381	1	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0134	9401	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0135	9408	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0136	9407	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0137	9377	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0138	9390	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0139	9400	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0140	9403	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0141	9366	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0142	9365	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0143	9398	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0144	9379	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0145	9378	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0146	9379	1	0	0	1	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0147	9379	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0148	9377	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0149	9392	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0150	9380	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0151	9379	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0152	9380	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0153	9377	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0154	9378	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0155	9379	1	0	1	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0156	9405	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0157	9407	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507
PIAS2_chr18_46798218_46922507	0/0	t0158	9385	1	1	0	0	copy fasta	PIAS2	chr18	46798218	46922507